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BioRuby full changelog

BioRuby full changelog

BioRuby 2.0.0 released Jun 14, 2019 (New Release)
Features moved to separete gems
Some features are moved to separate gems because of reducing complexity and/or to avoid external library dependency of BioRuby core.

BioRuby Shell is moved to “bio-shell”
BioRuby Shell is split to “bio-shell” gem.

Executable files are moved to “bio-executables”
To avoid unexpected loading of executable files by some Rails software, all executable commands are moved to “bio-executables” gem (except the “bioruby” command that is included in the above “bio-shell” gem).

Fast BLAST XML result parser by using Expat XML Parser is moved to “bio-blast-xmlparser”
Fast BLAST XML result parser by using Expat XML Parser is split to “bio-blast-xmlparser” gem, because of external C library dependency. Please install “bio-blast-xmlparser” gem if possible. If it is installed, BioRuby automatically use it.

Bio::PhyloXML is moved to “bioruby-phyloxml”
Bio::PhyloXML is split to “bioruby-phyloxml” gem.

BioRuby for Windows 7 - free download notice

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Full BioRuby 2.0.0 details

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