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Unipro UGENE for Windows 7 - Perform DNA and protein sequence analysis - Windows 7 Download

Unipro UGENE Windows 7

Unipro UGENE 1.33.0

A free visual software solution for DNA and protein sequence analysis

Unipro UGENE is a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, analysis, annotation of genetic sequences. Key features are: Integrated MUSCLE alignment tool, Integrated HMMER2 package, OpenGL viewer for PDB macromolecular structures, and Workflow Designer to create and execute custom computational workflows.

Unipro UGENE 1.33.0 full details

File Size: 45.80 MB
License: Freeware
Price: FREE
Released: 2019-02-27
Downloads: Total: 614 | This Month: 0
Publisher: Unipro
Publisher URL: http://ugene.unipro.ru/


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User Rating: 3.5 (12 votes)

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Unipro UGENE 1.33.0 full description

Unipro UGENE is a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, analysis, annotation of genetic sequences. Unipro UGENE is a powerful piece of software that provides you with advanced tools for creating, editing and annotating nucleic acid and protein sequences. In addition, the application also helps you view and edit chromatograms. In terms of features, let us just say that the application does not suffer any kind of shortages. It comes with support for multiple biological data formats and it provides visualization modules for objects ranging from next-generation sequencing data all the way up to phylogenetic trees and other complex 3D structures. aking all of the above into careful consideration, Unipro UGENE is a complex computational tool that provides bioinformatics researchers with a new way to process NGS data.

Features:

Integrated tools
Multiple sequence alignment using MUSCLE 3, KAlign, Clustal;
HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
PCR Primers design using Primer 3;
Cloning in silico capabilities;
Queries to NCBI BLAST and CDD databases;
Protein secondary structure prediction using GOR IV and PSIPRED;
Phylogenetic analysis with Phylip;
Search for restriction enzymes and integration with REBASE;
Extremely fast repeat finder;
DNA short reads to reference alignment using Bowtie;
De novo assembly with CAP3;
Search for transcription factor binding sites using SITECON;
Protein back translation;
ORF finder;
Complete Smith-Waterman algorithm implementation;
Support for external tools: BLAST+, MAFFT, T-Coffee;
Assembly Browser — a shiny BAM viewer.

User interface
Visual and interactive genome browsing including circular plasmid view;
Multiple alignment editor;
Chromatograms visualization;
3D viewer for files in PDB and MMDB formats with anaglyph stereo mode support;
Phylogenetic tree viewer;
Dot plot visualization;
Query designer enables search for complex annotation patterns;
Easy to use workflow designer for custom computational workflows.

High performance computing in UGENE
Complete support of modern multicore processors and SSE instructions;
Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;
Support for cloud computing: running computational tasks on Amazon EC2 cloud;
Support for supercomputers and distributed computing.

Cooperation
Can be used for education purposes in schools and universities;
Features to be included into the next release are initiated by users;
UGENE team is ready for collaboration in related projects, both free or commercial

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Unipro UGENE 1.33.0 Windows 7 release notes

New Release
Import of your tool into UGENE external tools: the list of external tools is available in the UGENE Application Settings dialog. Here for each tool you can provide a path to the tool executable file. Since UGENE version 33 you can also specify your own tools. See documentation for details.

Enhanced wizard for creating a workflow element for the tool: to use a custom tool in the UGENE Workflow Designer graphical interface, create a workflow element that specifies the tool input/output, parameters, and the command. To start the wizard click 'Create element with external tool' button on the WD toolbar on the WD toolbar.
[ Unipro UGENE release history ]
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