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Unipro UGENE 64-bit for Windows 7 - A free visual software solution for DNA - Windows 7 Download

Unipro UGENE 64-bit Windows 7

Unipro UGENE 64-bit 1.33.0

A free visual software solution for DNA and protein sequence analysis

Unipro UGENE 64-bit is a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, analysis, annotation of genetic sequences. Key features are: Integrated MUSCLE alignment tool, Integrated HMMER2 package, OpenGL viewer for PDB macromolecular structures, and Workflow Designer to create and execute custom computational workflows.

Unipro UGENE 64-bit 1.33.0 full details

File Size: 253.00 MB
License: Freeware
Price: FREE
Released: 2019-02-27
Downloads: Total: 403 | This Month: 0
Publisher: Unipro
Publisher URL: http://ugene.unipro.ru/


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User Rating: 2.8 (18 votes)

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Unipro UGENE 64-bit 1.33.0 full description

Unipro UGENE 64-bit is a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, analysis, annotation of genetic sequences.

Features:

Integrated tools
Multiple sequence alignment using MUSCLE 3, KAlign, Clustal;
HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
PCR Primers design using Primer 3;
Cloning in silico capabilities;
Queries to NCBI BLAST and CDD databases;
Protein secondary structure prediction using GOR IV and PSIPRED;
Phylogenetic analysis with Phylip;
Search for restriction enzymes and integration with REBASE;
Extremely fast repeat finder;
DNA short reads to reference alignment using Bowtie;
De novo assembly with CAP3;
Search for transcription factor binding sites using SITECON;
Protein back translation;
ORF finder;
Complete Smith-Waterman algorithm implementation;
Support for external tools: BLAST+, MAFFT, T-Coffee;
Assembly Browser — a shiny BAM viewer.

User interface
Visual and interactive genome browsing including circular plasmid view;
Multiple alignment editor;
Chromatograms visualization;
3D viewer for files in PDB and MMDB formats with anaglyph stereo mode support;
Phylogenetic tree viewer;
Dot plot visualization;
Query designer enables search for complex annotation patterns;
Easy to use workflow designer for custom computational workflows.

High performance computing in UGENE
Complete support of modern multicore processors and SSE instructions;
Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;
Support for cloud computing: running computational tasks on Amazon EC2 cloud;
Support for supercomputers and distributed computing.

Cooperation
Can be used for education purposes in schools and universities;
Features to be included into the next release are initiated by users;
UGENE team is ready for collaboration in related projects, both free or commercial

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Unipro UGENE 64-bit 1.33.0 Windows 7 release notes

New Release
Import of your tool into UGENE external tools: the list of external tools is available in the UGENE Application Settings dialog. Here for each tool you can provide a path to the tool executable file. Since UGENE version 33 you can also specify your own tools. See documentation for details.

Enhanced wizard for creating a workflow element for the tool: to use a custom tool in the UGENE Workflow Designer graphical interface, create a workflow element that specifies the tool input/output, parameters, and the command. To start the wizard click 'Create element with external tool' button on the WD toolbar on the WD toolbar.
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