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SiBELia full changelog

SiBELia full changelog

SiBELia 3.0.6 released Jan 21, 2015 (New Release)
Fixed a bug with crash when 0 simplificaiont stages specified
When both --graphfile" and --visualize are set, graph is output at each stage
Added commandline option --noblocks
SiBELia 3.0.5 released Jun 23, 2014 (New Release)
Removed commandline options: -a, --alignment
Added commandline options: --maf
Added the third parameters set "far"
Changed permissions of LAGAN scripts to run on some platforms
Changed structure of the directory "share" (Linux platforms only)
Fixed a bug with misorder of aligned repeats (affected -a option of C-Sibelia only)
Fixed some compiler warnings yielded by LAGAN sources
Fixed a bug in hierarchy circos output that resulted in uncompilable configs for some datasets
SiBELia 3.0.4 released Oct 5, 2013 (New Release)
· Fixed a bug in C-Sibelia: incorrect reporting of variants within synteny blocks having opposite directions
· Added output of synteny blocks in GFF format
· Removed sequences without synteny blocks from Circos diagrams
· Blocks orientations are depicted on Circos diagram by different colors
· Added Sibelia cmd options: --nopostprocess, --allstages, --correctboundaries, gff, --lastk
· Added C-Sibelia cmd options: -o, -a
· C-Sibelia outputs whole genome alignments in XMFA format (-o flag)
· Slightly changed quot;finequot; parameters simplification set
SiBELia 3.0.3 released Sep 6, 2013 (New Release)
· Fixed a bug in C-Sibelia: incorrect reporting of variants within synteny blocks having opposite directions
· Added output of synteny blocks in GFF format
· Removed sequences without synteny blocks from Circos diagrams
· Blocks orientations are depicted on Circos diagram by different colors
· Added Sibelia cmd options: --nopostprocess, --allstages, --correctboundaries, gff, --lastk
· Added C-Sibelia cmd options: -o, -a
· C-Sibelia outputs whole genome alignments in XMFA format (-o flag)
· Slightly changed quot;finequot; parameters simplification set

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Full SiBELia 3.0.6 details

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