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BEAST full changelog

BEAST full changelog

BEAST 1.10.4 released Nov 14, 2018 (New Release)
BEAST v1.10.4 fixes a bug when trying specify a burnin on the command line version of LogCombiner. It also introduces two new command line options specific to BEAGLE v3.1 (-beagle_threading_off and -beagle_thread_count).
BEAST 1.10.3 released Oct 29, 2018 (New Release)
BEAST v1.10.2 is a minor bug fix release.
BEAST 1.10.2 released Oct 8, 2018 (New Release)
New Features:
Implement Pearson Correlation Statistic
Bug fixes:
Issue 609: BEAUti duplicate prefix issue for multi-partition
Issue 611: BEAUti misnames the rates log file for BSSVS
Issue 612: BEAUTi robust counting XML was not overriding the default
stripping of ambiguous sites.
Issue 614: Writing Newick user tree in BEAUti doesn't quote taxa with space in the name
Issue 615: Multivariate traits generation by BEAUti was broken in the 1.7.1 update
Issue 618: BEAUti errors in States panel
Issue 619: BEAUti bug: cannot select a defined taxon set in
"Apply to taxon set" at the Tip date sampling
Issue 620: BEAUti only allows taxon sets >1 taxa
Issue 621: r3896 and r4062 broke Skyride in BEAUti
Issue 622: BEAUti: the "big" updown operator is missing for BEAST when calibration
Issue 623: Logging multiple branch rate models in same tree log is broken
Issue 624: Check boxes in BEAUti States panel do not line up
Issue 625: BEAUti XML invalid for 1 codon-partitioned partition and any 2nd partiti
BEAST 1.10.1 released Feb 9, 2015 (New Release)
New Features:
Implement Pearson Correlation Statistic
BEAST 1.10.0 released Feb 9, 2015 (New Release)
New Features:
Implement Pearson Correlation Statistic
Bug fixes:
Issue 609: BEAUti duplicate prefix issue for multi-partition
Issue 611: BEAUti misnames the rates log file for BSSVS
Issue 612: BEAUTi robust counting XML was not overriding the default
stripping of ambiguous sites.
Issue 614: Writing Newick user tree in BEAUti doesn't quote taxa with space in the name
Issue 615: Multivariate traits generation by BEAUti was broken in the 1.7.1 update
Issue 618: BEAUti errors in States panel
Issue 619: BEAUti bug: cannot select a defined taxon set in
"Apply to taxon set" at the Tip date sampling
Issue 620: BEAUti only allows taxon sets >1 taxa
Issue 621: r3896 and r4062 broke Skyride in BEAUti
Issue 622: BEAUti: the "big" updown operator is missing for BEAST when calibration
Issue 623: Logging multiple branch rate models in same tree log is broken
Issue 624: Check boxes in BEAUti States panel do not line up
Issue 625: BEAUti XML invalid for 1 codon-partitioned partition and any 2nd partiti
BEAST 1.8.1 released Feb 9, 2015 (New Release)
New features:
Local clock (fixed) model as option in 'Clocks' panel. Creates local rate for each taxon set with enforced monophyly.
Multilocus models with discrete traits can be generated by BEAUti.
Selection filters in Taxon Set panel allows quick selection by name.
Improved robust counting under null distribution for measuring selection.
Can link parameters in BEAUti to sample together.
TreeAnnotator can specify burnin as number of states or trees.

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Full BEAST 1.10.4 details

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